Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm5940-201ENSMUST00000117582 1068 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm12203-201ENSMUST00000118235 598 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm12209-201ENSMUST00000120089 596 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm45880-201ENSMUST00000213041 853 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm7399-201ENSMUST00000032395 858 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Rn7sk-201ENSMUST00000083103 331 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Gm26315-201ENSMUST00000083890 321 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.68□□□□□ -0.54
Nkx3-1P97436 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Nkx3-1P97436 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.67□□□□□ -0.54
Nkx3-1P97436 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC11.67□□□□□ -0.54
Nkx3-1P97436 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 AC154171.1-201ENSMUST00000224610 643 ntBASIC11.67□□□□□ -0.54
Nkx3-1P97436 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.67□□□□□ -0.54
Nkx3-1P97436 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Nkx3-1P97436 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gm1335-201ENSMUST00000121653 386 ntBASIC11.66□□□□□ -0.54
Nkx3-1P97436 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Nkx3-1P97436 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC11.66□□□□□ -0.54
Nkx3-1P97436 Gm18054-201ENSMUST00000207539 555 ntBASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms