Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm5866-201ENSMUST00000177881 973 ntBASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm19220-201ENSMUST00000222682 803 ntBASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.34□□□□□ -0.11
Rpa3Q9CQ71 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rpa3Q9CQ71 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rpa3Q9CQ71 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rpa3Q9CQ71 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Gm2423-201ENSMUST00000074863 733 ntBASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rpa3Q9CQ71 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm7488-201ENSMUST00000117148 684 ntBASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm12485-201ENSMUST00000119641 291 ntBASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm25925-201ENSMUST00000158314 306 ntBASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm43094-201ENSMUST00000196549 921 ntBASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Rpa3Q9CQ71 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms