Protein–RNA interactions for Protein: P59708

Sf3b6, Splicing factor 3B subunit 6, mousemouse

Known RBP Predictions only

Length 125 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b6P59708 Gm44851-201ENSMUST00000205735 2309 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm18737-201ENSMUST00000173594 937 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.04□□□□□ -0.48
Sf3b6P59708 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm5628-201ENSMUST00000222318 1049 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 AC155252.2-201ENSMUST00000226946 680 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.04□□□□□ -0.48
Sf3b6P59708 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Sf3b6P59708 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sf3b6P59708 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Mir698-201ENSMUST00000102164 109 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Gm19891-201ENSMUST00000189771 303 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Gm18057-201ENSMUST00000208220 503 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Chchd1-203ENSMUST00000224633 557 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sf3b6P59708 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sf3b6P59708 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.03□□□□□ -0.48
Sf3b6P59708 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sf3b6P59708 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms