Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC15.68■□□□□ 0.1
Col1a1P11087 Gm8862-201ENSMUST00000198379 1346 ntBASIC15.68■□□□□ 0.1
Col1a1P11087 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col1a1P11087 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col1a1P11087 AC123857.2-201ENSMUST00000225756 1582 ntBASIC15.67■□□□□ 0.1
Col1a1P11087 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Col1a1P11087 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Snord83b-201ENSMUST00000104546 94 ntBASIC15.67■□□□□ 0.1
Col1a1P11087 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
Col1a1P11087 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Col1a1P11087 Gm9004-201ENSMUST00000218739 1222 ntBASIC15.67■□□□□ 0.1
Col1a1P11087 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col1a1P11087 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.67■□□□□ 0.1
Col1a1P11087 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC15.67■□□□□ 0.1
Col1a1P11087 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Mir5120-201ENSMUST00000175020 78 ntBASIC15.66■□□□□ 0.1
Col1a1P11087 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC15.66■□□□□ 0.1
Col1a1P11087 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Gm19208-201ENSMUST00000213861 912 ntBASIC15.66■□□□□ 0.1
Col1a1P11087 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col1a1P11087 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC15.66■□□□□ 0.1
Col1a1P11087 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col1a1P11087 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col1a1P11087 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col1a1P11087 Gm23270-201ENSMUST00000104055 131 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC15.65■□□□□ 0.1
Col1a1P11087 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Gm22121-201ENSMUST00000175148 54 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC15.65■□□□□ 0.1
Col1a1P11087 Gm6458-201ENSMUST00000211573 635 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 AC167669.2-201ENSMUST00000224417 1620 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.65■□□□□ 0.1
Col1a1P11087 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.65■□□□□ 0.1
Col1a1P11087 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col1a1P11087 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col1a1P11087 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms