Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
Col18a1P39061 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Col18a1P39061 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC17.58■□□□□ 0.4
Col18a1P39061 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Col18a1P39061 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC17.57■□□□□ 0.4
Col18a1P39061 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Mir219a-1-201ENSMUST00000083621 110 ntBASIC17.57■□□□□ 0.4
Col18a1P39061 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Col18a1P39061 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Col18a1P39061 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Col18a1P39061 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Gm14150-201ENSMUST00000122404 1354 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Gm15711-201ENSMUST00000118889 535 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC17.56■□□□□ 0.4
Col18a1P39061 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 AC125209.1-201ENSMUST00000225812 766 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Col18a1P39061 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Col18a1P39061 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Col18a1P39061 Gm14058-201ENSMUST00000116082 735 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC17.56■□□□□ 0.4
Col18a1P39061 Gm16296-201ENSMUST00000159905 325 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Gm6652-201ENSMUST00000186414 1070 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
Col18a1P39061 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 CT009713.8-201ENSMUST00000225448 560 ntBASIC17.56■□□□□ 0.4
Col18a1P39061 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC17.55■□□□□ 0.4
Col18a1P39061 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Col18a1P39061 Gm4797-201ENSMUST00000219075 1283 ntBASIC17.55■□□□□ 0.4
Col18a1P39061 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC17.55■□□□□ 0.4
Col18a1P39061 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC17.55■□□□□ 0.4
Col18a1P39061 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Col18a1P39061 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.54■□□□□ 0.4
Col18a1P39061 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC17.54■□□□□ 0.4
Col18a1P39061 Gm27627-201ENSMUST00000183644 150 ntBASIC17.54■□□□□ 0.4
Col18a1P39061 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms