Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sox9Q04887 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.01□□□□□ -0.17
Sox9Q04887 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Sox9Q04887 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Sox9Q04887 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC14.01□□□□□ -0.17
Sox9Q04887 Gm29741-201ENSMUST00000192667 421 ntBASIC14.01□□□□□ -0.17
Sox9Q04887 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.01□□□□□ -0.17
Sox9Q04887 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.01□□□□□ -0.17
Sox9Q04887 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sox9Q04887 Gm10782-202ENSMUST00000223775 1480 ntBASIC14□□□□□ -0.17
Sox9Q04887 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Sox9Q04887 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14□□□□□ -0.17
Sox9Q04887 Gm12012-201ENSMUST00000118857 1066 ntBASIC14□□□□□ -0.17
Sox9Q04887 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Sox9Q04887 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sox9Q04887 AC134254.1-201ENSMUST00000221362 167 ntBASIC14□□□□□ -0.17
Sox9Q04887 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Gm45133-201ENSMUST00000207548 2773 ntBASIC14□□□□□ -0.17
Sox9Q04887 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Sox9Q04887 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Sox9Q04887 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14□□□□□ -0.17
Sox9Q04887 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Sox9Q04887 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14□□□□□ -0.17
Sox9Q04887 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Sox9Q04887 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.99□□□□□ -0.17
Sox9Q04887 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC13.99□□□□□ -0.17
Sox9Q04887 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Gm17870-201ENSMUST00000219489 1174 ntBASIC13.99□□□□□ -0.17
Sox9Q04887 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sox9Q04887 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sox9Q04887 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms