Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx2-1P50220 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Gm9727-201ENSMUST00000161387 555 ntBASIC11.34□□□□□ -0.59
Nkx2-1P50220 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.34□□□□□ -0.59
Nkx2-1P50220 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx2-1P50220 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC11.33□□□□□ -0.59
Nkx2-1P50220 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Ssr1-203ENSMUST00000225246 1825 ntBASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gm13597-201ENSMUST00000121239 375 ntBASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 CT030704.2-201ENSMUST00000228887 494 ntBASIC11.33□□□□□ -0.6
Nkx2-1P50220 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gm13410-201ENSMUST00000117058 1415 ntBASIC11.33□□□□□ -0.6
Nkx2-1P50220 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx2-1P50220 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx2-1P50220 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx2-1P50220 CT025626.1-201ENSMUST00000223735 1455 ntBASIC11.32□□□□□ -0.6
Nkx2-1P50220 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx2-1P50220 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx2-1P50220 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx2-1P50220 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms