Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Ercc3P49135 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ercc3P49135 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Ercc3P49135 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC16.26■□□□□ 0.19
Ercc3P49135 Gm6912-201ENSMUST00000117218 544 ntBASIC16.26■□□□□ 0.19
Ercc3P49135 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Ercc3P49135 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.26■□□□□ 0.19
Ercc3P49135 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Ercc3P49135 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.26■□□□□ 0.19
Ercc3P49135 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.26■□□□□ 0.19
Ercc3P49135 Ankra2-208ENSMUST00000226100 1476 ntBASIC16.26■□□□□ 0.19
Ercc3P49135 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Ercc3P49135 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ercc3P49135 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.25■□□□□ 0.19
Ercc3P49135 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.25■□□□□ 0.19
Ercc3P49135 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Ercc3P49135 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.25■□□□□ 0.19
Ercc3P49135 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ercc3P49135 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm45003-201ENSMUST00000205875 2158 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Mir698-201ENSMUST00000102164 109 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm15376-201ENSMUST00000122258 783 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm23984-201ENSMUST00000157139 203 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.24■□□□□ 0.19
Ercc3P49135 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Gm5279-201ENSMUST00000199575 745 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Gm18905-201ENSMUST00000205454 928 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ercc3P49135 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Gm20632-201ENSMUST00000176760 2427 ntBASIC16.24■□□□□ 0.19
Ercc3P49135 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ercc3P49135 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Ercc3P49135 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Ercc3P49135 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Ercc3P49135 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Ercc3P49135 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 AC164107.1-201ENSMUST00000227730 2161 ntBASIC16.23■□□□□ 0.19
Ercc3P49135 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.23■□□□□ 0.19
Ercc3P49135 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.23■□□□□ 0.19
Ercc3P49135 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.23■□□□□ 0.19
Ercc3P49135 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Ercc3P49135 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
Ercc3P49135 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ercc3P49135 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
Ercc3P49135 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Ercc3P49135 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ercc3P49135 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms