Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col2a1P28481 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col2a1P28481 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col2a1P28481 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Col2a1P28481 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Col2a1P28481 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Gm43273-201ENSMUST00000199649 2594 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC15.33■□□□□ 0.04
Col2a1P28481 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC15.33■□□□□ 0.04
Col2a1P28481 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Col2a1P28481 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC15.33■□□□□ 0.04
Col2a1P28481 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Gm7809-201ENSMUST00000153199 742 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Col2a1P28481 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Gm27501-201ENSMUST00000183599 107 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC15.33■□□□□ 0.04
Col2a1P28481 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC15.33■□□□□ 0.04
Col2a1P28481 Gm38158-201ENSMUST00000194617 339 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Gm44772-201ENSMUST00000207623 1191 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC15.33■□□□□ 0.04
Col2a1P28481 Gm7172-201ENSMUST00000218047 1152 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
Col2a1P28481 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Col2a1P28481 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.33■□□□□ 0.04
Col2a1P28481 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC15.32■□□□□ 0.04
Col2a1P28481 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm22121-201ENSMUST00000175148 54 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Gm42627-201ENSMUST00000197347 224 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.32■□□□□ 0.04
Col2a1P28481 Gm19163-201ENSMUST00000223313 780 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Col2a1P28481 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.32■□□□□ 0.04
Col2a1P28481 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Col2a1P28481 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col2a1P28481 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col2a1P28481 Sybu-209ENSMUST00000228639 4113 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.31■□□□□ 0.04
Col2a1P28481 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Gm8805-201ENSMUST00000117848 313 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC15.31■□□□□ 0.04
Col2a1P28481 Gm29396-201ENSMUST00000185659 716 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Gm9257-201ENSMUST00000221254 232 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 Rassf8-202ENSMUST00000058538 1131 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 Gm17383-201ENSMUST00000078739 1041 ntBASIC15.31■□□□□ 0.04
Col2a1P28481 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col2a1P28481 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Col2a1P28481 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms