Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Lima1Q9ERG0 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.23■□□□□ 0.99
Lima1Q9ERG0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lima1Q9ERG0 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lima1Q9ERG0 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lima1Q9ERG0 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.22■□□□□ 0.99
Lima1Q9ERG0 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.22■□□□□ 0.99
Lima1Q9ERG0 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lima1Q9ERG0 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Lima1Q9ERG0 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lima1Q9ERG0 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lima1Q9ERG0 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Lima1Q9ERG0 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC21.2■□□□□ 0.98
Lima1Q9ERG0 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Lima1Q9ERG0 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Lima1Q9ERG0 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Terc-201ENSMUST00000082862 423 ntBASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.19■□□□□ 0.98
Lima1Q9ERG0 Notumos-201ENSMUST00000151998 2659 ntBASIC21.19■□□□□ 0.98
Lima1Q9ERG0 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Lima1Q9ERG0 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.18■□□□□ 0.98
Lima1Q9ERG0 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.18■□□□□ 0.98
Lima1Q9ERG0 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lima1Q9ERG0 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.18■□□□□ 0.98
Lima1Q9ERG0 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lima1Q9ERG0 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Gm6311-201ENSMUST00000073790 878 ntBASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lima1Q9ERG0 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Lima1Q9ERG0 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lima1Q9ERG0 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lima1Q9ERG0 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Lima1Q9ERG0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lima1Q9ERG0 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.16■□□□□ 0.98
Lima1Q9ERG0 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lima1Q9ERG0 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Lima1Q9ERG0 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Lima1Q9ERG0 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Lima1Q9ERG0 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC21.12■□□□□ 0.97
Lima1Q9ERG0 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Lima1Q9ERG0 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Lima1Q9ERG0 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Lima1Q9ERG0 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Hsf1-207ENSMUST00000228371 2102 ntBASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lima1Q9ERG0 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Gm22567-201ENSMUST00000175542 342 ntBASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Lima1Q9ERG0 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Lima1Q9ERG0 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Lima1Q9ERG0 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.08■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms