Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
ShhQ62226 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ShhQ62226 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.01■□□□□ 0.79
ShhQ62226 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.01■□□□□ 0.79
ShhQ62226 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.01■□□□□ 0.79
ShhQ62226 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
ShhQ62226 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ShhQ62226 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ShhQ62226 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.99■□□□□ 0.79
ShhQ62226 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ShhQ62226 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
ShhQ62226 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ShhQ62226 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.99■□□□□ 0.79
ShhQ62226 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ShhQ62226 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ShhQ62226 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
ShhQ62226 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ShhQ62226 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.98■□□□□ 0.79
ShhQ62226 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.98■□□□□ 0.79
ShhQ62226 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
ShhQ62226 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ShhQ62226 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ShhQ62226 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.97■□□□□ 0.79
ShhQ62226 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ShhQ62226 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ShhQ62226 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ShhQ62226 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.97■□□□□ 0.79
ShhQ62226 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ShhQ62226 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
ShhQ62226 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ShhQ62226 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ShhQ62226 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ShhQ62226 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.95■□□□□ 0.78
ShhQ62226 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ShhQ62226 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ShhQ62226 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
ShhQ62226 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.94■□□□□ 0.78
ShhQ62226 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.94■□□□□ 0.78
ShhQ62226 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ShhQ62226 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ShhQ62226 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
ShhQ62226 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ShhQ62226 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.92■□□□□ 0.78
ShhQ62226 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ShhQ62226 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
ShhQ62226 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ShhQ62226 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.91■□□□□ 0.78
ShhQ62226 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ShhQ62226 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ShhQ62226 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ShhQ62226 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ShhQ62226 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.91■□□□□ 0.78
ShhQ62226 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ShhQ62226 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
ShhQ62226 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
ShhQ62226 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ShhQ62226 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.9■□□□□ 0.78
ShhQ62226 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
ShhQ62226 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ShhQ62226 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ShhQ62226 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ShhQ62226 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ShhQ62226 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ShhQ62226 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.89■□□□□ 0.77
ShhQ62226 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ShhQ62226 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ShhQ62226 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
ShhQ62226 Gm10232-201ENSMUST00000089221 720 ntBASIC19.89■□□□□ 0.77
ShhQ62226 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ShhQ62226 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ShhQ62226 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
ShhQ62226 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ShhQ62226 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ShhQ62226 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.88■□□□□ 0.77
ShhQ62226 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC19.88■□□□□ 0.77
ShhQ62226 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms