Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.87■□□□□ 0.77
Usf1Q61069 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.87■□□□□ 0.77
Usf1Q61069 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.87■□□□□ 0.77
Usf1Q61069 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usf1Q61069 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usf1Q61069 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usf1Q61069 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usf1Q61069 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usf1Q61069 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
Usf1Q61069 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usf1Q61069 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usf1Q61069 Gm45417-201ENSMUST00000209533 758 ntBASIC19.85■□□□□ 0.77
Usf1Q61069 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usf1Q61069 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usf1Q61069 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usf1Q61069 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usf1Q61069 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usf1Q61069 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.84■□□□□ 0.77
Usf1Q61069 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Usf1Q61069 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usf1Q61069 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usf1Q61069 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.77
Usf1Q61069 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Usf1Q61069 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usf1Q61069 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Usf1Q61069 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usf1Q61069 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.82■□□□□ 0.76
Usf1Q61069 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usf1Q61069 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usf1Q61069 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usf1Q61069 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.82■□□□□ 0.76
Usf1Q61069 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usf1Q61069 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Usf1Q61069 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.81■□□□□ 0.76
Usf1Q61069 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usf1Q61069 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usf1Q61069 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Usf1Q61069 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usf1Q61069 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usf1Q61069 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
Usf1Q61069 Golgb1-201ENSMUST00000023534 498 ntBASIC19.8■□□□□ 0.76
Usf1Q61069 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Usf1Q61069 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC19.79■□□□□ 0.76
Usf1Q61069 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC19.79■□□□□ 0.76
Usf1Q61069 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usf1Q61069 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Usf1Q61069 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.78■□□□□ 0.76
Usf1Q61069 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.78■□□□□ 0.76
Usf1Q61069 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.78■□□□□ 0.76
Usf1Q61069 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usf1Q61069 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usf1Q61069 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Usf1Q61069 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Usf1Q61069 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Usf1Q61069 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
Usf1Q61069 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC19.76■□□□□ 0.75
Usf1Q61069 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.76■□□□□ 0.75
Usf1Q61069 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.76■□□□□ 0.75
Usf1Q61069 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Usf1Q61069 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Usf1Q61069 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usf1Q61069 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Usf1Q61069 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC19.75■□□□□ 0.75
Usf1Q61069 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Usf1Q61069 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usf1Q61069 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usf1Q61069 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usf1Q61069 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC19.74■□□□□ 0.75
Usf1Q61069 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
Usf1Q61069 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Usf1Q61069 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usf1Q61069 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usf1Q61069 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.73■□□□□ 0.75
Usf1Q61069 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usf1Q61069 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms