Protein–RNA interactions for Protein: P35951

Ldlr, Low-density lipoprotein receptor, mousemouse

Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LdlrP35951 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LdlrP35951 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LdlrP35951 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
LdlrP35951 Gm7332-201ENSMUST00000118351 454 ntBASIC21.44■■□□□ 1.02
LdlrP35951 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LdlrP35951 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LdlrP35951 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LdlrP35951 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
LdlrP35951 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Gm45364-201ENSMUST00000210883 159 ntBASIC21.43■■□□□ 1.02
LdlrP35951 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LdlrP35951 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LdlrP35951 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LdlrP35951 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LdlrP35951 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LdlrP35951 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
LdlrP35951 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LdlrP35951 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.41■■□□□ 1.02
LdlrP35951 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LdlrP35951 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.41■■□□□ 1.02
LdlrP35951 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LdlrP35951 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LdlrP35951 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LdlrP35951 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
LdlrP35951 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.4■■□□□ 1.02
LdlrP35951 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LdlrP35951 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LdlrP35951 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LdlrP35951 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LdlrP35951 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.39■■□□□ 1.02
LdlrP35951 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LdlrP35951 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LdlrP35951 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LdlrP35951 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LdlrP35951 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
LdlrP35951 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.38■■□□□ 1.01
LdlrP35951 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LdlrP35951 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
LdlrP35951 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Gm27502-201ENSMUST00000183495 199 ntBASIC21.37■■□□□ 1.01
LdlrP35951 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Terc-201ENSMUST00000082862 423 ntBASIC21.37■■□□□ 1.01
LdlrP35951 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
LdlrP35951 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LdlrP35951 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.36■■□□□ 1.01
LdlrP35951 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LdlrP35951 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LdlrP35951 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
LdlrP35951 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
LdlrP35951 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LdlrP35951 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LdlrP35951 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LdlrP35951 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
LdlrP35951 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LdlrP35951 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LdlrP35951 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LdlrP35951 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.33■■□□□ 1.01
LdlrP35951 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.33■■□□□ 1.01
LdlrP35951 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LdlrP35951 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LdlrP35951 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LdlrP35951 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LdlrP35951 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.33■■□□□ 1
LdlrP35951 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC21.33■■□□□ 1
LdlrP35951 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
LdlrP35951 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LdlrP35951 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LdlrP35951 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LdlrP35951 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.32■■□□□ 1
LdlrP35951 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LdlrP35951 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.32■■□□□ 1
LdlrP35951 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LdlrP35951 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LdlrP35951 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.31■■□□□ 1
LdlrP35951 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LdlrP35951 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LdlrP35951 Gm20634-201ENSMUST00000090779 2956 ntBASIC21.3■■□□□ 1
LdlrP35951 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LdlrP35951 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.3■■□□□ 1
LdlrP35951 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.3■■□□□ 1
LdlrP35951 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
LdlrP35951 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms