Protein–RNA interactions for Protein: O88890

Sh2d1a, SH2 domain-containing protein 1A, mousemouse

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh2d1aO88890 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Sh2d1aO88890 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Sh2d1aO88890 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sh2d1aO88890 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Sh2d1aO88890 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 AC151971.4-201ENSMUST00000214717 704 ntBASIC15.14■□□□□ 0.01
Sh2d1aO88890 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Sh2d1aO88890 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Sh2d1aO88890 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Gm11175-201ENSMUST00000116172 543 ntBASIC15.12■□□□□ 0.01
Sh2d1aO88890 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Sh2d1aO88890 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC15.12■□□□□ 0.01
Sh2d1aO88890 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Gm27502-201ENSMUST00000183495 199 ntBASIC15.11■□□□□ 0.01
Sh2d1aO88890 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Sh2d1aO88890 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Sh2d1aO88890 AC117769.4-201ENSMUST00000225679 685 ntBASIC15.1■□□□□ 0.01
Sh2d1aO88890 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Sh2d1aO88890 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Sh2d1aO88890 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sh2d1aO88890 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
Sh2d1aO88890 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Sh2d1aO88890 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh2d1aO88890 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Sh2d1aO88890 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC15.08■□□□□ 0
Sh2d1aO88890 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Sh2d1aO88890 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC15.08■□□□□ 0
Sh2d1aO88890 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Sh2d1aO88890 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC15.08■□□□□ 0
Sh2d1aO88890 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC15.08■□□□□ 0
Sh2d1aO88890 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Sh2d1aO88890 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC15.07■□□□□ 0
Sh2d1aO88890 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Sh2d1aO88890 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms