Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Sh3rf1Q69ZI1 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm14767-201ENSMUST00000121559 586 ntBASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sh3rf1Q69ZI1 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Gm45098-201ENSMUST00000207179 657 ntBASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sh3rf1Q69ZI1 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sh3rf1Q69ZI1 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sh3rf1Q69ZI1 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms