Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 CROCCP4-201ENST00000457096 498 ntBASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC88AQ3V6T2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 LETM1P2-201ENST00000597330 2178 ntBASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC88AQ3V6T2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.82
CCDC88AQ3V6T2 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC88AQ3V6T2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.82
CCDC88AQ3V6T2 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 MYCLP2-201ENST00000449268 967 ntBASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC018665.1-201ENST00000622927 1362 ntBASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC092053.1-201ENST00000605787 1936 ntBASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 AC092068.3-201ENST00000587894 2016 ntBASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC88AQ3V6T2 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC092933.1-201ENST00000393644 945 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 MIR1908-201ENST00000410394 80 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC108725.1-201ENST00000495472 409 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC021097.1-201ENST00000607902 574 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC018470.1-201ENST00000624790 3129 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC139713.2-201ENST00000641328 2723 ntBASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
CCDC88AQ3V6T2 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms