Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
Cops4O88544 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Gm17271-201ENSMUST00000165535 355 ntBASIC12.66□□□□□ -0.38
Cops4O88544 Gm44945-201ENSMUST00000206764 1187 ntBASIC12.66□□□□□ -0.38
Cops4O88544 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.66□□□□□ -0.38
Cops4O88544 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC12.66□□□□□ -0.38
Cops4O88544 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.66□□□□□ -0.38
Cops4O88544 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Cops4O88544 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
Cops4O88544 AC131586.3-201ENSMUST00000228355 1367 ntBASIC12.66□□□□□ -0.38
Cops4O88544 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.66□□□□□ -0.38
Cops4O88544 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Cops4O88544 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.65□□□□□ -0.38
Cops4O88544 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Cops4O88544 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC12.65□□□□□ -0.38
Cops4O88544 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Cops4O88544 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Cops4O88544 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC12.65□□□□□ -0.38
Cops4O88544 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Gm15483-201ENSMUST00000120338 456 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Gm12882-201ENSMUST00000121696 517 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC12.65□□□□□ -0.38
Cops4O88544 Klk2-ps-201ENSMUST00000205342 571 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Gm18206-201ENSMUST00000207027 926 ntBASIC12.65□□□□□ -0.38
Cops4O88544 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Cops4O88544 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Cops4O88544 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Cops4O88544 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
Cops4O88544 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.39
Cops4O88544 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Cops4O88544 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.64□□□□□ -0.39
Cops4O88544 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.64□□□□□ -0.39
Cops4O88544 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.64□□□□□ -0.39
Cops4O88544 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Cops4O88544 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms