Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Gm27306-201ENSMUST00000183970 107 ntBASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Arhgef33-209ENSMUST00000225223 714 ntBASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Gm2423-201ENSMUST00000074863 733 ntBASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gm18766-201ENSMUST00000189811 808 ntBASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Sh3rf1Q69ZI1 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm28630-201ENSMUST00000187806 498 ntBASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Wdyhv1-203ENSMUST00000226889 394 ntBASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Sh3rf1Q69ZI1 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms