Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC15.1■□□□□ 0.01
Col11a1Q61245 AC161537.1-201ENSMUST00000226199 1015 ntBASIC15.1■□□□□ 0.01
Col11a1Q61245 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.1■□□□□ 0.01
Col11a1Q61245 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col11a1Q61245 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Col11a1Q61245 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Col11a1Q61245 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Col11a1Q61245 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.09■□□□□ 0.01
Col11a1Q61245 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Crry-ps-201ENSMUST00000079090 1309 ntBASIC15.09■□□□□ 0.01
Col11a1Q61245 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.09■□□□□ 0.01
Col11a1Q61245 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC15.09■□□□□ 0.01
Col11a1Q61245 Gm13097-201ENSMUST00000210722 397 ntBASIC15.09■□□□□ 0.01
Col11a1Q61245 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC15.09■□□□□ 0.01
Col11a1Q61245 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Col11a1Q61245 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Col11a1Q61245 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC15.08■□□□□ 0.01
Col11a1Q61245 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Col11a1Q61245 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC15.08■□□□□ 0.01
Col11a1Q61245 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0.01
Col11a1Q61245 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC15.08■□□□□ 0.01
Col11a1Q61245 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Col11a1Q61245 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Gm12502-201ENSMUST00000120197 444 ntBASIC15.08■□□□□ 0
Col11a1Q61245 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC15.08■□□□□ 0
Col11a1Q61245 Gm43378-201ENSMUST00000199336 582 ntBASIC15.08■□□□□ 0
Col11a1Q61245 Gm8099-201ENSMUST00000200510 742 ntBASIC15.08■□□□□ 0
Col11a1Q61245 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.08■□□□□ 0
Col11a1Q61245 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC15.08■□□□□ 0
Col11a1Q61245 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Col11a1Q61245 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col11a1Q61245 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.07■□□□□ 0
Col11a1Q61245 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC15.07■□□□□ 0
Col11a1Q61245 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC15.07■□□□□ 0
Col11a1Q61245 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC15.07■□□□□ 0
Col11a1Q61245 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC15.07■□□□□ 0
Col11a1Q61245 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC15.07■□□□□ 0
Col11a1Q61245 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col11a1Q61245 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col11a1Q61245 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col11a1Q61245 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col11a1Q61245 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC15.06■□□□□ 0
Col11a1Q61245 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms