Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Gm22175-201ENSMUST00000175007 78 ntBASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col28a1Q2UY11 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.4□□□□□ -0.27
Col28a1Q2UY11 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Mir449b-201ENSMUST00000104833 80 ntBASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gm9385-201ENSMUST00000117563 472 ntBASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gm16198-201ENSMUST00000118766 670 ntBASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Rpph1-201ENSMUST00000175096 319 ntBASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Col28a1Q2UY11 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm12882-201ENSMUST00000121696 517 ntBASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col28a1Q2UY11 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms