Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Cux1P53564 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC20.82■□□□□ 0.92
Cux1P53564 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Morn2-202ENSMUST00000227729 656 ntBASIC20.82■□□□□ 0.92
Cux1P53564 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Cux1P53564 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cux1P53564 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cux1P53564 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cux1P53564 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Cux1P53564 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC20.81■□□□□ 0.92
Cux1P53564 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Cux1P53564 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Cux1P53564 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Cux1P53564 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Gm14381-201ENSMUST00000122105 414 ntBASIC20.81■□□□□ 0.92
Cux1P53564 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC20.81■□□□□ 0.92
Cux1P53564 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC20.81■□□□□ 0.92
Cux1P53564 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cux1P53564 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
Cux1P53564 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Gm20482-202ENSMUST00000174729 825 ntBASIC20.8■□□□□ 0.92
Cux1P53564 Mospd4-201ENSMUST00000180618 576 ntBASIC20.8■□□□□ 0.92
Cux1P53564 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC20.8■□□□□ 0.92
Cux1P53564 Gm37489-201ENSMUST00000191883 159 ntBASIC20.8■□□□□ 0.92
Cux1P53564 Gm4768-201ENSMUST00000206199 686 ntBASIC20.8■□□□□ 0.92
Cux1P53564 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Cux1P53564 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Cux1P53564 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Cux1P53564 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cux1P53564 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Cux1P53564 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC20.79■□□□□ 0.92
Cux1P53564 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC20.79■□□□□ 0.92
Cux1P53564 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Cux1P53564 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Cux1P53564 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 Shroom3-211ENSMUST00000225438 5742 ntBASIC20.79■□□□□ 0.92
Cux1P53564 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC20.79■□□□□ 0.92
Cux1P53564 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cux1P53564 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC20.78■□□□□ 0.92
Cux1P53564 Gm25214-201ENSMUST00000104573 129 ntBASIC20.78■□□□□ 0.92
Cux1P53564 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Gm27320-201ENSMUST00000184892 109 ntBASIC20.78■□□□□ 0.92
Cux1P53564 Mettl6-204ENSMUST00000227595 1027 ntBASIC20.78■□□□□ 0.92
Cux1P53564 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Cux1P53564 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cux1P53564 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cux1P53564 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms