Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Ighv8-14-201ENSMUST00000196781 358 ntBASIC11.04□□□□□ -0.64
Chd6A3KFM7 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Gm24447-201ENSMUST00000083977 338 ntBASIC11.04□□□□□ -0.64
Chd6A3KFM7 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Ap5m1-205ENSMUST00000227431 3757 ntBASIC11.04□□□□□ -0.64
Chd6A3KFM7 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Chd6A3KFM7 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm9726-201ENSMUST00000180321 678 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm5950-201ENSMUST00000213337 772 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm9996-201ENSMUST00000070359 913 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm24749-201ENSMUST00000157838 343 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm8913-201ENSMUST00000209491 641 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Gm19680-201ENSMUST00000095050 1513 ntBASIC11.03□□□□□ -0.64
Chd6A3KFM7 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Chd6A3KFM7 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Chd6A3KFM7 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.02□□□□□ -0.64
Chd6A3KFM7 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Gm26956-201ENSMUST00000182176 986 ntBASIC11.02□□□□□ -0.64
Chd6A3KFM7 Mir6546-201ENSMUST00000184460 62 ntBASIC11.02□□□□□ -0.64
Chd6A3KFM7 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.02□□□□□ -0.64
Chd6A3KFM7 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.02□□□□□ -0.64
Chd6A3KFM7 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Chd6A3KFM7 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Gm45856-201ENSMUST00000212752 416 ntBASIC11.02□□□□□ -0.65
Chd6A3KFM7 Gm9111-201ENSMUST00000219394 709 ntBASIC11.02□□□□□ -0.65
Chd6A3KFM7 AC154184.3-201ENSMUST00000225620 1090 ntBASIC11.02□□□□□ -0.65
Chd6A3KFM7 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Gm8242-201ENSMUST00000193029 1420 ntBASIC11.02□□□□□ -0.65
Chd6A3KFM7 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Chd6A3KFM7 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms