Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Sh3rf1Q69ZI1 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Sh3rf1Q69ZI1 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm13453-201ENSMUST00000118708 357 ntBASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm29541-201ENSMUST00000191351 678 ntBASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Sh3rf1Q69ZI1 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Gm6944-201ENSMUST00000182449 1006 ntBASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Gm5745-201ENSMUST00000183748 313 ntBASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Mir8102-201ENSMUST00000184148 139 ntBASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Sh3rf1Q69ZI1 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Sh3rf1Q69ZI1 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms