Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usf1Q61069 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Mir877-201ENSMUST00000104738 85 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Gm15808-201ENSMUST00000119046 604 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Gm26461-201ENSMUST00000175064 290 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.52□□□□□ -0.41
Usf1Q61069 Gm38341-201ENSMUST00000195357 515 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.52□□□□□ -0.41
Usf1Q61069 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.52□□□□□ -0.41
Usf1Q61069 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Snora73a-201ENSMUST00000082453 205 ntBASIC12.52□□□□□ -0.41
Usf1Q61069 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Usf1Q61069 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC12.52□□□□□ -0.41
Usf1Q61069 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usf1Q61069 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Usf1Q61069 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.51□□□□□ -0.41
Usf1Q61069 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC12.51□□□□□ -0.41
Usf1Q61069 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm26083-201ENSMUST00000157904 193 ntBASIC12.51□□□□□ -0.41
Usf1Q61069 Gm43133-201ENSMUST00000197472 463 ntBASIC12.51□□□□□ -0.41
Usf1Q61069 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
Usf1Q61069 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Usf1Q61069 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.51□□□□□ -0.41
Usf1Q61069 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC12.51□□□□□ -0.41
Usf1Q61069 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Usf1Q61069 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Usf1Q61069 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usf1Q61069 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Usf1Q61069 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Usf1Q61069 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Usf1Q61069 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm12241-201ENSMUST00000118330 726 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Gm13369-201ENSMUST00000119442 987 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Gm11793-201ENSMUST00000120433 981 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Gm11400-201ENSMUST00000120853 1214 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm7619-201ENSMUST00000210649 1282 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms