Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR3615-201ENST00000581999 87 ntBASIC17.49■□□□□ 0.39
CHD9Q3L8U1 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CHD9Q3L8U1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 ABALON-201ENST00000629058 1903 ntBASIC17.48■□□□□ 0.39
CHD9Q3L8U1 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 AC004408.2-201ENST00000623613 2777 ntBASIC17.48■□□□□ 0.39
CHD9Q3L8U1 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 AC005229.1-201ENST00000392885 409 ntBASIC17.48■□□□□ 0.39
CHD9Q3L8U1 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.48■□□□□ 0.39
CHD9Q3L8U1 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 AC092068.3-201ENST00000587894 2016 ntBASIC17.47■□□□□ 0.39
CHD9Q3L8U1 MIR1247-201ENST00000408206 136 ntBASIC17.47■□□□□ 0.39
CHD9Q3L8U1 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 GOLGA2P4-201ENST00000441462 777 ntBASIC17.47■□□□□ 0.39
CHD9Q3L8U1 AC108725.1-201ENST00000495472 409 ntBASIC17.47■□□□□ 0.39
CHD9Q3L8U1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 AL589702.1-201ENST00000641229 1509 ntBASIC17.47■□□□□ 0.39
CHD9Q3L8U1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHD9Q3L8U1 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.46■□□□□ 0.39
CHD9Q3L8U1 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 AC103810.3-201ENST00000583567 96 ntBASIC17.46■□□□□ 0.39
CHD9Q3L8U1 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 AC133963.1-201ENST00000504166 1679 ntBASIC17.46■□□□□ 0.39
CHD9Q3L8U1 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.46■□□□□ 0.39
CHD9Q3L8U1 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 BICD1-207ENST00000551848 1962 ntBASIC17.46■□□□□ 0.38
CHD9Q3L8U1 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 FO681548.1-201ENST00000455617 1132 ntBASIC17.46■□□□□ 0.38
CHD9Q3L8U1 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHD9Q3L8U1 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHD9Q3L8U1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms