Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm37201-201ENSMUST00000191845 523 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Col18a1P39061 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Col18a1P39061 Gm44651-201ENSMUST00000207343 372 ntBASIC17.85■□□□□ 0.45
Col18a1P39061 AC154849.4-201ENSMUST00000224868 365 ntBASIC17.85■□□□□ 0.45
Col18a1P39061 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Col18a1P39061 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.85■□□□□ 0.45
Col18a1P39061 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Col18a1P39061 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col18a1P39061 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
Col18a1P39061 AC135669.1-202ENSMUST00000216742 540 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 Gm18730-201ENSMUST00000218038 343 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 Gzmn-202ENSMUST00000225535 989 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC17.84■□□□□ 0.45
Col18a1P39061 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
Col18a1P39061 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Col18a1P39061 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
Col18a1P39061 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Gm6963-201ENSMUST00000147879 379 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 Gm24845-201ENSMUST00000158034 109 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC17.84■□□□□ 0.45
Col18a1P39061 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC17.84■□□□□ 0.45
Col18a1P39061 AC135469.1-201ENSMUST00000225984 772 ntBASIC17.84■□□□□ 0.45
Col18a1P39061 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col18a1P39061 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC17.83■□□□□ 0.45
Col18a1P39061 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Col18a1P39061 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Col18a1P39061 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col18a1P39061 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col18a1P39061 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.83■□□□□ 0.45
Col18a1P39061 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col18a1P39061 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.83■□□□□ 0.45
Col18a1P39061 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC17.83■□□□□ 0.44
Col18a1P39061 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC17.83■□□□□ 0.44
Col18a1P39061 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col18a1P39061 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Gm7789-202ENSMUST00000211273 1400 ntBASIC17.82■□□□□ 0.44
Col18a1P39061 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.82■□□□□ 0.44
Col18a1P39061 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Col18a1P39061 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Col18a1P39061 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col18a1P39061 Gm17391-201ENSMUST00000171036 126 ntBASIC17.82■□□□□ 0.44
Col18a1P39061 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms