Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Ddx28Q9CWT6 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm5648-201ENSMUST00000122244 1587 ntBASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm4995-201ENSMUST00000117247 432 ntBASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm43575-201ENSMUST00000196420 516 ntBASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Nrn1-204ENSMUST00000224323 1779 ntBASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Ddx28Q9CWT6 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm18057-201ENSMUST00000208220 503 ntBASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm15500-202ENSMUST00000071641 1019 ntBASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.97□□□□□ -0.33
Ddx28Q9CWT6 Grk6-205ENSMUST00000224653 2976 ntBASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Ddx28Q9CWT6 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms