Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Nkx3-1P97436 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm21038-201ENSMUST00000222205 1383 ntBASIC11.93□□□□□ -0.5
Nkx3-1P97436 Ssr1-204ENSMUST00000225319 1610 ntBASIC11.93□□□□□ -0.5
Nkx3-1P97436 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm12485-201ENSMUST00000119641 291 ntBASIC11.93□□□□□ -0.5
Nkx3-1P97436 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm8652-201ENSMUST00000181363 964 ntBASIC11.93□□□□□ -0.5
Nkx3-1P97436 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Nkx3-1P97436 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Gm27847-201ENSMUST00000183711 107 ntBASIC11.92□□□□□ -0.5
Nkx3-1P97436 Gm27375-201ENSMUST00000183799 107 ntBASIC11.92□□□□□ -0.5
Nkx3-1P97436 Gm5276-201ENSMUST00000196683 1047 ntBASIC11.92□□□□□ -0.5
Nkx3-1P97436 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 AC159196.2-201ENSMUST00000224082 1622 ntBASIC11.92□□□□□ -0.5
Nkx3-1P97436 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Nkx3-1P97436 AC115735.4-201ENSMUST00000227460 1944 ntBASIC11.92□□□□□ -0.5
Nkx3-1P97436 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Nkx3-1P97436 Gm6159-201ENSMUST00000191249 1724 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Zscan30-202ENSMUST00000224144 1458 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm13226-201ENSMUST00000117838 404 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm7561-201ENSMUST00000211203 886 ntBASIC11.91□□□□□ -0.5
Nkx3-1P97436 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Nkx3-1P97436 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms