Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC16.32■□□□□ 0.2
Col3a1P08121 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC16.32■□□□□ 0.2
Col3a1P08121 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col3a1P08121 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col3a1P08121 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Col3a1P08121 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.31■□□□□ 0.2
Col3a1P08121 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Col3a1P08121 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC16.31■□□□□ 0.2
Col3a1P08121 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.31■□□□□ 0.2
Col3a1P08121 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC16.31■□□□□ 0.2
Col3a1P08121 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC16.31■□□□□ 0.2
Col3a1P08121 Gm2639-201ENSMUST00000156881 1297 ntBASIC16.31■□□□□ 0.2
Col3a1P08121 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Gm8565-201ENSMUST00000183259 1014 ntBASIC16.31■□□□□ 0.2
Col3a1P08121 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Col3a1P08121 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC16.31■□□□□ 0.2
Col3a1P08121 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC16.31■□□□□ 0.2
Col3a1P08121 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col3a1P08121 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col3a1P08121 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col3a1P08121 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col3a1P08121 Gm45684-201ENSMUST00000210244 1571 ntBASIC16.3■□□□□ 0.2
Col3a1P08121 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.3■□□□□ 0.2
Col3a1P08121 Gm5620-201ENSMUST00000077991 1348 ntBASIC16.3■□□□□ 0.2
Col3a1P08121 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC16.3■□□□□ 0.2
Col3a1P08121 Gm1335-201ENSMUST00000121653 386 ntBASIC16.3■□□□□ 0.2
Col3a1P08121 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC16.3■□□□□ 0.2
Col3a1P08121 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col3a1P08121 Gm43118-201ENSMUST00000199149 775 ntBASIC16.3■□□□□ 0.2
Col3a1P08121 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC16.3■□□□□ 0.2
Col3a1P08121 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col3a1P08121 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col3a1P08121 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col3a1P08121 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC16.3■□□□□ 0.2
Col3a1P08121 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC16.3■□□□□ 0.2
Col3a1P08121 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col3a1P08121 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm44069-201ENSMUST00000204898 506 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 AC159896.2-201ENSMUST00000214753 269 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 AC154319.1-201ENSMUST00000216330 312 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 AL589735.1-201ENSMUST00000224353 270 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col3a1P08121 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col3a1P08121 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col3a1P08121 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col3a1P08121 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm42853-201ENSMUST00000201273 1387 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms