Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 AC153889.1-201ENSMUST00000219257 330 ntBASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Map1b-203ENSMUST00000223725 2669 ntBASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc9Q8VC31 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Ccdc9Q8VC31 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 AC127349.1-201ENSMUST00000224590 266 ntBASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc9Q8VC31 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Gm25406-201ENSMUST00000157599 105 ntBASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ccdc9Q8VC31 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Gm17807-201ENSMUST00000186869 298 ntBASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ccdc9Q8VC31 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms