Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC17.86■□□□□ 0.45
Trim28Q62318 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Gm27731-201ENSMUST00000185192 107 ntBASIC17.86■□□□□ 0.45
Trim28Q62318 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Trim28Q62318 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC17.86■□□□□ 0.45
Trim28Q62318 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim28Q62318 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 Gm28182-201ENSMUST00000188354 2477 ntBASIC17.85■□□□□ 0.45
Trim28Q62318 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Gm43630-201ENSMUST00000201550 776 ntBASIC17.85■□□□□ 0.45
Trim28Q62318 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Trim28Q62318 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 AC153962.4-201ENSMUST00000217878 242 ntBASIC17.85■□□□□ 0.45
Trim28Q62318 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trim28Q62318 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim28Q62318 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim28Q62318 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim28Q62318 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC17.84■□□□□ 0.45
Trim28Q62318 Snora78-201ENSMUST00000158630 128 ntBASIC17.84■□□□□ 0.45
Trim28Q62318 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Trim28Q62318 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC17.84■□□□□ 0.45
Trim28Q62318 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 AC140451.2-201ENSMUST00000228030 664 ntBASIC17.84■□□□□ 0.45
Trim28Q62318 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim28Q62318 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim28Q62318 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trim28Q62318 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim28Q62318 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim28Q62318 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim28Q62318 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
Trim28Q62318 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC17.83■□□□□ 0.45
Trim28Q62318 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim28Q62318 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Trim28Q62318 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Gm14350-201ENSMUST00000116642 640 ntBASIC17.83■□□□□ 0.44
Trim28Q62318 Gm12203-201ENSMUST00000118235 598 ntBASIC17.83■□□□□ 0.44
Trim28Q62318 Gm12209-201ENSMUST00000120089 596 ntBASIC17.83■□□□□ 0.44
Trim28Q62318 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Trim28Q62318 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Trim28Q62318 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim28Q62318 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim28Q62318 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms