Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC15.84■□□□□ 0.13
Trim11Q99PQ2 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim11Q99PQ2 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.13
Trim11Q99PQ2 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trim11Q99PQ2 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trim11Q99PQ2 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trim11Q99PQ2 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC15.83■□□□□ 0.13
Trim11Q99PQ2 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gm15653-201ENSMUST00000119247 907 ntBASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gm8396-201ENSMUST00000057361 823 ntBASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim11Q99PQ2 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Gm33320-201ENSMUST00000192232 530 ntBASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Acot6-202ENSMUST00000222921 3622 ntBASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
Trim11Q99PQ2 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Mir1897-201ENSMUST00000122581 272 ntBASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Gm27622-201ENSMUST00000183779 60 ntBASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.81■□□□□ 0.12
Trim11Q99PQ2 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trim11Q99PQ2 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms