Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
Clcn1Q64347 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Gm16342-201ENSMUST00000124025 1025 ntBASIC17.55■□□□□ 0.4
Clcn1Q64347 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC17.55■□□□□ 0.4
Clcn1Q64347 Gm9299-201ENSMUST00000206392 1140 ntBASIC17.55■□□□□ 0.4
Clcn1Q64347 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC17.55■□□□□ 0.4
Clcn1Q64347 AC125117.1-201ENSMUST00000228121 468 ntBASIC17.55■□□□□ 0.4
Clcn1Q64347 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
Clcn1Q64347 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.55■□□□□ 0.4
Clcn1Q64347 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Clcn1Q64347 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clcn1Q64347 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Clcn1Q64347 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC17.54■□□□□ 0.4
Clcn1Q64347 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Gm17420-201ENSMUST00000164753 153 ntBASIC17.54■□□□□ 0.4
Clcn1Q64347 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Ighv1-51-201ENSMUST00000192903 354 ntBASIC17.54■□□□□ 0.4
Clcn1Q64347 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC17.54■□□□□ 0.4
Clcn1Q64347 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Clcn1Q64347 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clcn1Q64347 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm11661-201ENSMUST00000121761 1327 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm5069-202ENSMUST00000192714 1011 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm44974-201ENSMUST00000206387 1279 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Ssr1-204ENSMUST00000225319 1610 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC17.53■□□□□ 0.4
Clcn1Q64347 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Clcn1Q64347 Mmp14-206ENSMUST00000225641 3238 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.53■□□□□ 0.4
Clcn1Q64347 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.52■□□□□ 0.4
Clcn1Q64347 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.52■□□□□ 0.4
Clcn1Q64347 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC17.52■□□□□ 0.4
Clcn1Q64347 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Clcn1Q64347 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Mup-ps23-201ENSMUST00000118063 630 ntBASIC17.52■□□□□ 0.4
Clcn1Q64347 Gm12485-201ENSMUST00000119641 291 ntBASIC17.52■□□□□ 0.4
Clcn1Q64347 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC17.52■□□□□ 0.4
Clcn1Q64347 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Clcn1Q64347 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC17.52■□□□□ 0.4
Clcn1Q64347 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clcn1Q64347 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Clcn1Q64347 Olfr582-201ENSMUST00000098212 960 ntBASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms