Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim28Q62318 AC155237.1-201ENSMUST00000226196 1279 ntBASIC17.9■□□□□ 0.46
Trim28Q62318 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.9■□□□□ 0.46
Trim28Q62318 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim28Q62318 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC17.9■□□□□ 0.46
Trim28Q62318 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Trim28Q62318 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trim28Q62318 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Gm38197-201ENSMUST00000192320 2122 ntBASIC17.89■□□□□ 0.45
Trim28Q62318 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Gm16177-201ENSMUST00000120728 718 ntBASIC17.89■□□□□ 0.45
Trim28Q62318 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC17.89■□□□□ 0.45
Trim28Q62318 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC17.89■□□□□ 0.45
Trim28Q62318 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
Trim28Q62318 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
Trim28Q62318 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim28Q62318 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
Trim28Q62318 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim28Q62318 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim28Q62318 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim28Q62318 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim28Q62318 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trim28Q62318 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Sorbs3-204ENSMUST00000227929 2460 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Gm10040-201ENSMUST00000080726 1662 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC17.88■□□□□ 0.45
Trim28Q62318 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Gm22331-201ENSMUST00000158066 136 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC17.88■□□□□ 0.45
Trim28Q62318 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 AC166349.1-201ENSMUST00000220866 695 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 AC125350.2-201ENSMUST00000224737 727 ntBASIC17.88■□□□□ 0.45
Trim28Q62318 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC17.88■□□□□ 0.45
Trim28Q62318 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim28Q62318 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim28Q62318 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trim28Q62318 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim28Q62318 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Trim28Q62318 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Gm23931-201ENSMUST00000103842 109 ntBASIC17.87■□□□□ 0.45
Trim28Q62318 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC17.87■□□□□ 0.45
Trim28Q62318 Gm27331-201ENSMUST00000183705 60 ntBASIC17.87■□□□□ 0.45
Trim28Q62318 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trim28Q62318 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim28Q62318 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Trim28Q62318 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
Trim28Q62318 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms