Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Col3a1P08121 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col3a1P08121 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC16.38■□□□□ 0.21
Col3a1P08121 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm28182-201ENSMUST00000188354 2477 ntBASIC16.38■□□□□ 0.21
Col3a1P08121 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC16.38■□□□□ 0.21
Col3a1P08121 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm26927-201ENSMUST00000182385 965 ntBASIC16.38■□□□□ 0.21
Col3a1P08121 Gm37497-201ENSMUST00000195830 798 ntBASIC16.38■□□□□ 0.21
Col3a1P08121 Gm40466-201ENSMUST00000212174 422 ntBASIC16.38■□□□□ 0.21
Col3a1P08121 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm8399-201ENSMUST00000082300 1117 ntBASIC16.38■□□□□ 0.21
Col3a1P08121 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC16.38■□□□□ 0.21
Col3a1P08121 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col3a1P08121 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Col3a1P08121 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Col3a1P08121 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC16.37■□□□□ 0.21
Col3a1P08121 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Gm37922-201ENSMUST00000195596 455 ntBASIC16.37■□□□□ 0.21
Col3a1P08121 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC16.37■□□□□ 0.21
Col3a1P08121 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Gm18630-201ENSMUST00000222109 1397 ntBASIC16.37■□□□□ 0.21
Col3a1P08121 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Col3a1P08121 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.37■□□□□ 0.21
Col3a1P08121 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col3a1P08121 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC16.36■□□□□ 0.21
Col3a1P08121 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm11618-201ENSMUST00000117946 267 ntBASIC16.36■□□□□ 0.21
Col3a1P08121 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm7029-201ENSMUST00000173226 450 ntBASIC16.36■□□□□ 0.21
Col3a1P08121 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm43818-201ENSMUST00000200605 466 ntBASIC16.36■□□□□ 0.21
Col3a1P08121 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Col3a1P08121 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Gm38197-201ENSMUST00000192320 2122 ntBASIC16.36■□□□□ 0.21
Col3a1P08121 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col3a1P08121 Abhd6-203ENSMUST00000225234 1958 ntBASIC16.36■□□□□ 0.21
Col3a1P08121 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC16.35■□□□□ 0.21
Col3a1P08121 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Gm18054-201ENSMUST00000207539 555 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Gm2824-203ENSMUST00000226189 1228 ntBASIC16.35■□□□□ 0.21
Col3a1P08121 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.35■□□□□ 0.21
Col3a1P08121 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col3a1P08121 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms