Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Gm18666-201ENSMUST00000190039 958 ntBASIC11.43□□□□□ -0.58
Trim63Q38HM4 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 CT009713.7-201ENSMUST00000224689 571 ntBASIC11.43□□□□□ -0.58
Trim63Q38HM4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trim63Q38HM4 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Matn2-203ENSMUST00000226766 3252 ntBASIC11.42□□□□□ -0.58
Trim63Q38HM4 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Gm44430-201ENSMUST00000203376 995 ntBASIC11.42□□□□□ -0.58
Trim63Q38HM4 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.42□□□□□ -0.58
Trim63Q38HM4 AC114585.2-202ENSMUST00000228094 426 ntBASIC11.42□□□□□ -0.58
Trim63Q38HM4 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.42□□□□□ -0.58
Trim63Q38HM4 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim63Q38HM4 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Gm43721-201ENSMUST00000199677 2313 ntBASIC11.41□□□□□ -0.58
Trim63Q38HM4 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Gm43767-201ENSMUST00000198933 381 ntBASIC11.41□□□□□ -0.58
Trim63Q38HM4 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Spcs1-207ENSMUST00000228767 1008 ntBASIC11.41□□□□□ -0.58
Trim63Q38HM4 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim63Q38HM4 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC11.41□□□□□ -0.58
Trim63Q38HM4 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Trim63Q38HM4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms