Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 AC168058.1-201ENSMUST00000219521 2282 ntBASIC16.42■□□□□ 0.22
Trim56Q80VI1 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Ldha-ps-201ENSMUST00000119390 995 ntBASIC16.42■□□□□ 0.22
Trim56Q80VI1 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Gm28631-201ENSMUST00000190740 334 ntBASIC16.42■□□□□ 0.22
Trim56Q80VI1 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trim56Q80VI1 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Gm24420-201ENSMUST00000176676 59 ntBASIC16.41■□□□□ 0.22
Trim56Q80VI1 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.41■□□□□ 0.22
Trim56Q80VI1 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trim56Q80VI1 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 AC154527.2-201ENSMUST00000225256 1466 ntBASIC16.4■□□□□ 0.22
Trim56Q80VI1 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trim56Q80VI1 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms