Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 AA543401-201ENSMUST00000164248 1269 ntBASIC13.59□□□□□ -0.23
Col28a1Q2UY11 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col28a1Q2UY11 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Col28a1Q2UY11 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Col28a1Q2UY11 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Gm37230-201ENSMUST00000194491 818 ntBASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC13.58□□□□□ -0.24
Col28a1Q2UY11 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 AC154262.2-201ENSMUST00000224310 2293 ntBASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Col28a1Q2UY11 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm27321-201ENSMUST00000185021 205 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm45747-201ENSMUST00000212203 999 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm5186-201ENSMUST00000218781 920 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Gm13127-201ENSMUST00000118978 1389 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.57□□□□□ -0.24
Col28a1Q2UY11 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms