Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col13a1Q9R1N9 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col13a1Q9R1N9 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col13a1Q9R1N9 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Col13a1Q9R1N9 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col13a1Q9R1N9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col13a1Q9R1N9 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC18.41■□□□□ 0.54
Col13a1Q9R1N9 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Col13a1Q9R1N9 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC18.41■□□□□ 0.54
Col13a1Q9R1N9 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col13a1Q9R1N9 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col13a1Q9R1N9 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col13a1Q9R1N9 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col13a1Q9R1N9 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col13a1Q9R1N9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col13a1Q9R1N9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col13a1Q9R1N9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col13a1Q9R1N9 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col13a1Q9R1N9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col13a1Q9R1N9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col13a1Q9R1N9 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col13a1Q9R1N9 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col13a1Q9R1N9 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col13a1Q9R1N9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col13a1Q9R1N9 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col13a1Q9R1N9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col13a1Q9R1N9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Col13a1Q9R1N9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col13a1Q9R1N9 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col13a1Q9R1N9 Gm22238-201ENSMUST00000175222 88 ntBASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col13a1Q9R1N9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Col13a1Q9R1N9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col13a1Q9R1N9 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.32■□□□□ 0.52
Col13a1Q9R1N9 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.32■□□□□ 0.52
Col13a1Q9R1N9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col13a1Q9R1N9 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col13a1Q9R1N9 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col13a1Q9R1N9 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Col13a1Q9R1N9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col13a1Q9R1N9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col13a1Q9R1N9 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms