Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Lims1Q99JW4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.96■□□□□ 0.79
Lims1Q99JW4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Lims1Q99JW4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lims1Q99JW4 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Lims1Q99JW4 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Lims1Q99JW4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Lims1Q99JW4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.92■□□□□ 0.78
Lims1Q99JW4 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lims1Q99JW4 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Lims1Q99JW4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Lims1Q99JW4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Lims1Q99JW4 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.91■□□□□ 0.78
Lims1Q99JW4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Lims1Q99JW4 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lims1Q99JW4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lims1Q99JW4 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Lims1Q99JW4 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
Lims1Q99JW4 AC167019.3-201ENSMUST00000228225 1266 ntBASIC19.89■□□□□ 0.77
Lims1Q99JW4 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lims1Q99JW4 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lims1Q99JW4 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Lims1Q99JW4 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lims1Q99JW4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Lims1Q99JW4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lims1Q99JW4 Pkd1-207ENSMUST00000228550 1050 ntBASIC19.87■□□□□ 0.77
Lims1Q99JW4 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Lims1Q99JW4 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lims1Q99JW4 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lims1Q99JW4 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.86■□□□□ 0.77
Lims1Q99JW4 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Lims1Q99JW4 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC19.86■□□□□ 0.77
Lims1Q99JW4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Lims1Q99JW4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lims1Q99JW4 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Lims1Q99JW4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Lims1Q99JW4 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.85■□□□□ 0.77
Lims1Q99JW4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Lims1Q99JW4 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC19.83■□□□□ 0.77
Lims1Q99JW4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
Lims1Q99JW4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Lims1Q99JW4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.83■□□□□ 0.76
Lims1Q99JW4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lims1Q99JW4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Lims1Q99JW4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lims1Q99JW4 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.82■□□□□ 0.76
Lims1Q99JW4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Lims1Q99JW4 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Lims1Q99JW4 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lims1Q99JW4 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC19.8■□□□□ 0.76
Lims1Q99JW4 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Lims1Q99JW4 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lims1Q99JW4 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.8■□□□□ 0.76
Lims1Q99JW4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lims1Q99JW4 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms