Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ubfd1Q78JW9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ubfd1Q78JW9 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Ubfd1Q78JW9 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.29■■□□□ 1
Ubfd1Q78JW9 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ubfd1Q78JW9 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Gm10232-201ENSMUST00000089221 720 ntBASIC21.27■■□□□ 1
Ubfd1Q78JW9 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ubfd1Q78JW9 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Ubfd1Q78JW9 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
Ubfd1Q78JW9 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ubfd1Q78JW9 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubfd1Q78JW9 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ubfd1Q78JW9 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubfd1Q78JW9 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ubfd1Q78JW9 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ubfd1Q78JW9 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ubfd1Q78JW9 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubfd1Q78JW9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ubfd1Q78JW9 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.23■□□□□ 0.99
Ubfd1Q78JW9 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubfd1Q78JW9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubfd1Q78JW9 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ubfd1Q78JW9 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Ubfd1Q78JW9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ubfd1Q78JW9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Rps24-207ENSMUST00000224568 714 ntBASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ubfd1Q78JW9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ubfd1Q78JW9 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ubfd1Q78JW9 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ubfd1Q78JW9 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ubfd1Q78JW9 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.2■□□□□ 0.98
Ubfd1Q78JW9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ubfd1Q78JW9 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ubfd1Q78JW9 Gm22567-201ENSMUST00000175542 342 ntBASIC21.19■□□□□ 0.98
Ubfd1Q78JW9 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.19■□□□□ 0.98
Ubfd1Q78JW9 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Ubfd1Q78JW9 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ubfd1Q78JW9 Nsd1-206ENSMUST00000224918 1001 ntBASIC21.18■□□□□ 0.98
Ubfd1Q78JW9 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ubfd1Q78JW9 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ubfd1Q78JW9 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Ubfd1Q78JW9 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Gm28536-201ENSMUST00000190971 1317 ntBASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ubfd1Q78JW9 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Gm45102-201ENSMUST00000207427 857 ntBASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ubfd1Q78JW9 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ubfd1Q78JW9 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ubfd1Q78JW9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ubfd1Q78JW9 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.13■□□□□ 0.97
Ubfd1Q78JW9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ubfd1Q78JW9 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ubfd1Q78JW9 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms