Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Nkx3-1P97436 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Nkx3-1P97436 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nkx3-1P97436 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Nkx3-1P97436 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Nkx3-1P97436 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
Nkx3-1P97436 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Nkx3-1P97436 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Nkx3-1P97436 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.86■□□□□ 0.61
Nkx3-1P97436 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Nkx3-1P97436 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.86■□□□□ 0.61
Nkx3-1P97436 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx3-1P97436 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx3-1P97436 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx3-1P97436 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Nkx3-1P97436 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.85■□□□□ 0.61
Nkx3-1P97436 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Nkx3-1P97436 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx3-1P97436 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.83■□□□□ 0.6
Nkx3-1P97436 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.83■□□□□ 0.6
Nkx3-1P97436 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.83■□□□□ 0.6
Nkx3-1P97436 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.83■□□□□ 0.6
Nkx3-1P97436 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.83■□□□□ 0.6
Nkx3-1P97436 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Nkx3-1P97436 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx3-1P97436 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.82■□□□□ 0.6
Nkx3-1P97436 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Nkx3-1P97436 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Nkx3-1P97436 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 AC153524.1-201ENSMUST00000220436 1935 ntBASIC18.81■□□□□ 0.6
Nkx3-1P97436 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Nkx3-1P97436 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Nkx3-1P97436 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC18.8■□□□□ 0.6
Nkx3-1P97436 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.8■□□□□ 0.6
Nkx3-1P97436 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx3-1P97436 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Nkx3-1P97436 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Nkx3-1P97436 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.78■□□□□ 0.6
Nkx3-1P97436 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Nkx3-1P97436 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Gm7417-201ENSMUST00000192950 473 ntBASIC18.77■□□□□ 0.6
Nkx3-1P97436 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nkx3-1P97436 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.76■□□□□ 0.59
Nkx3-1P97436 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nkx3-1P97436 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nkx3-1P97436 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Nkx3-1P97436 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx3-1P97436 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx3-1P97436 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx3-1P97436 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nkx3-1P97436 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms