Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.72■□□□□ 0.91
Sox3P53784 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox3P53784 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.72■□□□□ 0.91
Sox3P53784 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox3P53784 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sox3P53784 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.71■□□□□ 0.91
Sox3P53784 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.71■□□□□ 0.91
Sox3P53784 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sox3P53784 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox3P53784 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Sox3P53784 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Sox3P53784 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sox3P53784 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.69■□□□□ 0.9
Sox3P53784 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Sox3P53784 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sox3P53784 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.68■□□□□ 0.9
Sox3P53784 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.68■□□□□ 0.9
Sox3P53784 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.68■□□□□ 0.9
Sox3P53784 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox3P53784 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Sox3P53784 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Sox3P53784 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Sox3P53784 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sox3P53784 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox3P53784 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox3P53784 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sox3P53784 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox3P53784 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox3P53784 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox3P53784 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox3P53784 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox3P53784 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.66■□□□□ 0.9
Sox3P53784 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Sox3P53784 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Sox3P53784 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sox3P53784 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sox3P53784 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox3P53784 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Sox3P53784 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sox3P53784 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Sox3P53784 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.64■□□□□ 0.89
Sox3P53784 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Sox3P53784 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox3P53784 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox3P53784 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.63■□□□□ 0.89
Sox3P53784 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Sox3P53784 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox3P53784 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox3P53784 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sox3P53784 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox3P53784 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox3P53784 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sox3P53784 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sox3P53784 Etf1-202ENSMUST00000180351 108 ntBASIC20.62■□□□□ 0.89
Sox3P53784 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Sox3P53784 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Sox3P53784 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Sox3P53784 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Sox3P53784 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sox3P53784 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.61■□□□□ 0.89
Sox3P53784 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sox3P53784 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox3P53784 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.6■□□□□ 0.89
Sox3P53784 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.6■□□□□ 0.89
Sox3P53784 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox3P53784 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox3P53784 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sox3P53784 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Sox3P53784 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Sox3P53784 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sox3P53784 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.59■□□□□ 0.89
Sox3P53784 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Sox3P53784 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sox3P53784 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sox3P53784 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sox3P53784 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sox3P53784 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.58■□□□□ 0.89
Sox3P53784 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Sox3P53784 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sox3P53784 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms