Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx3P48381 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Rfx3P48381 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.56■□□□□ 0.72
Rfx3P48381 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx3P48381 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx3P48381 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx3P48381 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Rfx3P48381 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Rfx3P48381 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Rfx3P48381 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Rfx3P48381 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx3P48381 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx3P48381 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx3P48381 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC19.54■□□□□ 0.72
Rfx3P48381 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx3P48381 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.53■□□□□ 0.72
Rfx3P48381 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Rfx3P48381 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx3P48381 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx3P48381 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx3P48381 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx3P48381 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.53■□□□□ 0.72
Rfx3P48381 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx3P48381 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx3P48381 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx3P48381 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx3P48381 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx3P48381 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rfx3P48381 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Rfx3P48381 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.51■□□□□ 0.71
Rfx3P48381 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.51■□□□□ 0.71
Rfx3P48381 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx3P48381 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Rfx3P48381 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Rfx3P48381 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.5■□□□□ 0.71
Rfx3P48381 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Rfx3P48381 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.5■□□□□ 0.71
Rfx3P48381 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
Rfx3P48381 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Rfx3P48381 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx3P48381 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Rfx3P48381 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC19.49■□□□□ 0.71
Rfx3P48381 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx3P48381 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Rfx3P48381 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx3P48381 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Rfx3P48381 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx3P48381 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.48■□□□□ 0.71
Rfx3P48381 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx3P48381 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx3P48381 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Rfx3P48381 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.47■□□□□ 0.71
Rfx3P48381 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Rfx3P48381 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx3P48381 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx3P48381 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx3P48381 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.47■□□□□ 0.71
Rfx3P48381 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Rfx3P48381 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Rfx3P48381 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx3P48381 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx3P48381 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Rfx3P48381 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Rfx3P48381 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx3P48381 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.46■□□□□ 0.71
Rfx3P48381 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx3P48381 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Rfx3P48381 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx3P48381 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.45■□□□□ 0.7
Rfx3P48381 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx3P48381 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.44■□□□□ 0.7
Rfx3P48381 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Scarna2-201ENSMUST00000157560 414 ntBASIC19.44■□□□□ 0.7
Rfx3P48381 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Rfx3P48381 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx3P48381 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms