Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Sdc1P18828 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC11.47□□□□□ -0.57
Sdc1P18828 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Sdc1P18828 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Ighv6-1-201ENSMUST00000193612 343 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Sdc1P18828 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC11.47□□□□□ -0.57
Sdc1P18828 Gm43677-201ENSMUST00000198098 2378 ntBASIC11.47□□□□□ -0.57
Sdc1P18828 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Sdc1P18828 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC11.47□□□□□ -0.57
Sdc1P18828 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Sdc1P18828 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.46□□□□□ -0.57
Sdc1P18828 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Sdc1P18828 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Sdc1P18828 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
Sdc1P18828 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Sdc1P18828 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Mbnl2-204ENSMUST00000227012 2390 ntBASIC11.46□□□□□ -0.57
Sdc1P18828 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC11.46□□□□□ -0.57
Sdc1P18828 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC11.46□□□□□ -0.57
Sdc1P18828 Gm15165-201ENSMUST00000118140 502 ntBASIC11.46□□□□□ -0.57
Sdc1P18828 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC11.46□□□□□ -0.57
Sdc1P18828 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
Sdc1P18828 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC11.46□□□□□ -0.57
Sdc1P18828 Gm7977-201ENSMUST00000193787 748 ntBASIC11.46□□□□□ -0.57
Sdc1P18828 Gm5939-201ENSMUST00000119613 2874 ntBASIC11.46□□□□□ -0.57
Sdc1P18828 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Sdc1P18828 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Sdc1P18828 Gm44891-201ENSMUST00000208817 2223 ntBASIC11.45□□□□□ -0.58
Sdc1P18828 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Sdc1P18828 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Sdc1P18828 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Sdc1P18828 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Sdc1P18828 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC11.45□□□□□ -0.58
Sdc1P18828 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 AC126549.2-201ENSMUST00000223997 1976 ntBASIC11.45□□□□□ -0.58
Sdc1P18828 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Sdc1P18828 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.44□□□□□ -0.58
Sdc1P18828 Gm26616-202ENSMUST00000195676 3107 ntBASIC11.44□□□□□ -0.58
Sdc1P18828 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Sdc1P18828 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 100.9 ms