Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Il17rd-203ENSMUST00000225146 3366 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 AC139382.1-201ENSMUST00000221402 498 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 AC102291.3-201ENSMUST00000226566 405 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Gm8396-201ENSMUST00000057361 823 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col28a1Q2UY11 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Mir6956-201ENSMUST00000183598 62 ntBASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Gm17968-201ENSMUST00000194902 784 ntBASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms