Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
Ube3dQ8BX13 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm13517-201ENSMUST00000120782 1495 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm6415-201ENSMUST00000118488 348 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm9726-201ENSMUST00000180321 678 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gm18049-201ENSMUST00000208909 581 ntBASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ube3dQ8BX13 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm15693-201ENSMUST00000120470 637 ntBASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm27622-201ENSMUST00000183779 60 ntBASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Mir7023-201ENSMUST00000185093 64 ntBASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Gm20949-201ENSMUST00000206478 952 ntBASIC12.54□□□□□ -0.4
Ube3dQ8BX13 AC126408.1-201ENSMUST00000225184 523 ntBASIC12.54□□□□□ -0.4
Ube3dQ8BX13 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms