Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.25□□□□□ -0.29
Trim40Q3UWA4 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Trim40Q3UWA4 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm5682-201ENSMUST00000173402 505 ntBASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm27459-201ENSMUST00000184860 107 ntBASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Gm7977-201ENSMUST00000193787 748 ntBASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 AC102291.3-201ENSMUST00000226566 405 ntBASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Trim40Q3UWA4 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Gm21362-201ENSMUST00000194272 928 ntBASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Rps4l-201ENSMUST00000071745 943 ntBASIC13.23□□□□□ -0.29
Trim40Q3UWA4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim40Q3UWA4 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
Trim40Q3UWA4 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.22□□□□□ -0.29
Trim40Q3UWA4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.22□□□□□ -0.29
Trim40Q3UWA4 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim40Q3UWA4 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms