Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox1P53783 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.33□□□□□ -0.12
Sox1P53783 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.33□□□□□ -0.12
Sox1P53783 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox1P53783 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox1P53783 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sox1P53783 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Sox1P53783 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.32□□□□□ -0.12
Sox1P53783 Gm12485-201ENSMUST00000119641 291 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Gm14017-201ENSMUST00000121934 386 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.32□□□□□ -0.12
Sox1P53783 Gm10275-202ENSMUST00000168697 495 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.32□□□□□ -0.12
Sox1P53783 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.32□□□□□ -0.12
Sox1P53783 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC14.32□□□□□ -0.12
Sox1P53783 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox1P53783 Gm10275-201ENSMUST00000092620 635 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sox1P53783 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.32□□□□□ -0.12
Sox1P53783 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sox1P53783 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox1P53783 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Sox1P53783 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Sox1P53783 Ntrk2-205ENSMUST00000224402 2284 ntBASIC14.31□□□□□ -0.12
Sox1P53783 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Selenot-ps-201ENSMUST00000119098 593 ntBASIC14.31□□□□□ -0.12
Sox1P53783 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Gm2260-201ENSMUST00000184965 657 ntBASIC14.31□□□□□ -0.12
Sox1P53783 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC14.31□□□□□ -0.12
Sox1P53783 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Sox1P53783 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.31□□□□□ -0.12
Sox1P53783 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Sox1P53783 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox1P53783 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Sox1P53783 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Sox1P53783 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC14.3□□□□□ -0.12
Sox1P53783 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC14.3□□□□□ -0.12
Sox1P53783 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Sox1P53783 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Sox1P53783 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC14.3□□□□□ -0.12
Sox1P53783 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.3□□□□□ -0.12
Sox1P53783 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC14.3□□□□□ -0.12
Sox1P53783 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.3□□□□□ -0.12
Sox1P53783 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sox1P53783 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Sox1P53783 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sox1P53783 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.29□□□□□ -0.12
Sox1P53783 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms