Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Rfx1P48377 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.87■□□□□ 0.29
Rfx1P48377 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.87■□□□□ 0.29
Rfx1P48377 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Rfx1P48377 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.87■□□□□ 0.29
Rfx1P48377 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Rfx1P48377 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Rfx1P48377 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Rfx1P48377 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Rfx1P48377 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Rfx1P48377 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Rfx1P48377 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Rfx1P48377 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Rfx1P48377 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Rfx1P48377 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Rfx1P48377 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
Rfx1P48377 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Rfx1P48377 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Rfx1P48377 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Rfx1P48377 Gm27301-201ENSMUST00000184012 127 ntBASIC16.85■□□□□ 0.29
Rfx1P48377 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Klk2-ps-201ENSMUST00000205342 571 ntBASIC16.85■□□□□ 0.29
Rfx1P48377 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Rfx1P48377 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Rfx1P48377 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Rfx1P48377 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Rfx1P48377 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC16.84■□□□□ 0.29
Rfx1P48377 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Mir5131-201ENSMUST00000175426 93 ntBASIC16.84■□□□□ 0.29
Rfx1P48377 Gm5177-201ENSMUST00000183092 997 ntBASIC16.84■□□□□ 0.29
Rfx1P48377 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.84■□□□□ 0.29
Rfx1P48377 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC16.84■□□□□ 0.29
Rfx1P48377 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
Rfx1P48377 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Rfx1P48377 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Rfx1P48377 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 AC154262.2-201ENSMUST00000224310 2293 ntBASIC16.84■□□□□ 0.29
Rfx1P48377 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Rfx1P48377 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Rfx1P48377 Gm38094-201ENSMUST00000195864 2978 ntBASIC16.83■□□□□ 0.29
Rfx1P48377 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms